This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

dPeak (Deconvolution of Peaks in ChIP-seq Analysis)

Bioconductor version: Release (3.19)

dPeak is a statistical framework for the high resolution identification of protein-DNA interaction sites using PET and SET ChIP-Seq and ChIP-exo data. It provides computationally efficient and user friendly interface to process ChIP-seq and ChIP-exo data, implement exploratory analysis, fit dPeak model, and export list of predicted binding sites for downstream analysis.

Author: Dongjun Chung, Carter Allen

Maintainer: Dongjun Chung <dongjun.chung at gmail.com>

Citation (from within R, enter citation("dpeak")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


Reference Manual PDF


biocViews ChIPSeq, Genetics, Sequencing, Software, Transcription
Version 1.16.0
In Bioconductor since BioC 3.11 (R-4.0) (4 years)
License GPL (>= 2)
Depends R (>= 4.0.0), methods, stats, utils, graphics, Rcpp
Imports MASS, IRanges, BSgenome, grDevices, parallel
System Requirements GNU make, meme, fimo
Bug Reports https://github.com/dongjunchung/dpeak/issues
See More
Suggests BSgenome.Ecoli.NCBI.20080805
Linking To Rcpp
Depends On Me
Imports Me
Suggests Me
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Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary dpeak_1.16.0.zip
macOS Binary (x86_64) dpeak_1.16.0.tgz
macOS Binary (arm64) dpeak_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/dpeak
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/dpeak
Package Short Url https://bioconductor.org/packages/dpeak/
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