clstutils

This is the released version of clstutils; for the devel version, see clstutils.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8

Tools for performing taxonomic assignment

Bioconductor version: Release (3.23)

Tools for performing taxonomic assignment based on phylogeny using pplacer and clst.

Author: Noah Hoffman

Maintainer: Noah Hoffman <ngh2 at uw.edu>

Citation (from within R, enter citation("clstutils")):

Noah Hoffman. clstutils: Tools for performing taxonomic assignment. doi:10.18129/B9.bioc.clstutils, R package version 1.60.0, https://bioconductor.org/packages/clstutils.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("clstutils")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("clstutils")

clst	PDF	R Script
clstutils	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Classification, QualityControl, Sequencing, Software, Visualization
Version	1.60.0
In Bioconductor since	BioC 2.8 (R-2.13) (15.5 years)
License	GPL-3
Depends	R (>= 2.10), clst, rjson, ape
Imports	lattice, RSQLite
System Requirements
URL

Suggests	RUnit
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	clstutils_1.60.0.tar.gz
Windows Binary (x86_64)	clstutils_1.60.0.zip
macOS Binary (big-sur-x86_64)	clstutils_1.60.0.tgz
macOS Binary (sonoma-arm64)	clstutils_1.60.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/clstutils
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/clstutils
Package Short Url	https://bioconductor.org/packages/clstutils/
Package Downloads Report	Download Stats