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clstutils

Tools for performing taxonomic assignment


Bioconductor version: Release (3.18)

Tools for performing taxonomic assignment based on phylogeny using pplacer and clst.

Author: Noah Hoffman

Maintainer: Noah Hoffman <ngh2 at uw.edu>

Citation (from within R, enter citation("clstutils")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("clstutils")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("clstutils")
clst PDF R Script
clstutils PDF R Script
Reference Manual PDF

Details

biocViews Classification, QualityControl, Sequencing, Software, Visualization
Version 1.50.0
In Bioconductor since BioC 2.8 (R-2.13) (13 years)
License GPL-3
Depends R (>= 2.10), clst, rjson, ape
Imports lattice, RSQLite
System Requirements
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Suggests RUnit
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package clstutils_1.50.0.tar.gz
Windows Binary clstutils_1.50.0.zip (64-bit only)
macOS Binary (x86_64) clstutils_1.50.0.tgz
macOS Binary (arm64) clstutils_1.50.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/clstutils
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/clstutils
Bioc Package Browser https://code.bioconductor.org/browse/clstutils/
Package Short Url https://bioconductor.org/packages/clstutils/
Package Downloads Report Download Stats