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biodbKegg

biodbKegg, a library for connecting to the KEGG Database


Bioconductor version: Release (3.18)

The biodbKegg library is an extension of the biodb framework package that provides access to the KEGG databases Compound, Enzyme, Genes, Module, Orthology and Reaction. It allows to retrieve entries by their accession numbers. Web services like "find", "list" and "findExactMass" are also available. Some functions for navigating along the pathways have also been implemented.

Author: Pierrick Roger [aut, cre]

Maintainer: Pierrick Roger <pierrick.roger at cea.fr>

Citation (from within R, enter citation("biodbKegg")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("biodbKegg")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biodbKegg")
Introduction to the biodbKegg package. HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, Infrastructure, KEGG, Pathways, Software
Version 1.8.0
In Bioconductor since BioC 3.14 (R-4.1) (2.5 years)
License AGPL-3
Depends R (>= 4.1)
Imports R6, biodb(>= 1.4.2), chk, lifecycle
System Requirements
URL https://github.com/pkrog/biodbKegg
Bug Reports https://github.com/pkrog/biodbKegg/issues
See More
Suggests BiocStyle, roxygen2, devtools, testthat (>= 2.0.0), knitr, rmarkdown, igraph, magick, lgr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package biodbKegg_1.8.0.tar.gz
Windows Binary biodbKegg_1.8.0.zip (64-bit only)
macOS Binary (x86_64) biodbKegg_1.8.0.tgz
macOS Binary (arm64) biodbKegg_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/biodbKegg
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/biodbKegg
Bioc Package Browser https://code.bioconductor.org/browse/biodbKegg/
Package Short Url https://bioconductor.org/packages/biodbKegg/
Package Downloads Report Download Stats