Welcome to the new bioconductor.org!

beadarraySNP

Normalization and reporting of Illumina SNP bead arrays


Bioconductor version: Release (3.18)

Importing data from Illumina SNP experiments and performing copy number calculations and reports.

Author: Jan Oosting

Maintainer: Jan Oosting <j.oosting at lumc.nl>

Citation (from within R, enter citation("beadarraySNP")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("beadarraySNP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("beadarraySNP")
beadarraySNP.pdf PDF R Script
Reference Manual PDF

Details

biocViews CopyNumberVariation, DataImport, GeneticVariability, Preprocessing, SNP, Software, TwoChannel
Version 1.68.0
In Bioconductor since BioC 1.9 (R-2.4) (17.5 years)
License GPL-2
Depends methods, Biobase(>= 2.14), quantsmooth
Imports
System Requirements
URL
See More
Suggests aCGH, affy, limma, snapCGH, beadarray, DNAcopy
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package beadarraySNP_1.68.0.tar.gz
Windows Binary beadarraySNP_1.68.0.zip (64-bit only)
macOS Binary (x86_64) beadarraySNP_1.68.0.tgz
macOS Binary (arm64) beadarraySNP_1.68.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/beadarraySNP
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/beadarraySNP
Bioc Package Browser https://code.bioconductor.org/browse/beadarraySNP/
Package Short Url https://bioconductor.org/packages/beadarraySNP/
Package Downloads Report Download Stats