SEPIRA

DOI: 10.18129/B9.bioc.SEPIRA    

Systems EPigenomics Inference of Regulatory Activity

Bioconductor version: Release (3.7)

SEPIRA (Systems EPigenomics Inference of Regulatory Activity) is an algorithm that infers sample-specific transcription factor activity from the genome-wide expression or DNA methylation profile of the sample.

Author: Yuting Chen [aut, cre], Andrew Teschendorff [aut]

Maintainer: Yuting Chen <cytwarmmay at hotmail.com>

Citation (from within R, enter citation("SEPIRA")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SEPIRA")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SEPIRA")

 

HTML R Script Introduction to `SEPIRA`
PDF   Reference Manual
Text   NEWS

Details

biocViews GeneExpression, GeneRegulation, GeneTarget, Network, NetworkInference, Software, Transcription
Version 1.0.1
License GPL-3
Depends R (>= 3.5.0)
Imports limma(>= 3.32.5), corpcor (>= 1.6.9), parallel (>= 3.3.1), stats
LinkingTo
Suggests knitr, rmarkdown, testthat, igraph
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SEPIRA_1.0.1.tar.gz
Windows Binary SEPIRA_1.0.1.zip
Mac OS X 10.11 (El Capitan) SEPIRA_1.0.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/SEPIRA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SEPIRA
Package Short Url http://bioconductor.org/packages/SEPIRA/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive

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