SEPIRA

DOI: 10.18129/B9.bioc.SEPIRA    

Systems EPigenomics Inference of Regulatory Activity

Bioconductor version: Release (3.7)

SEPIRA (Systems EPigenomics Inference of Regulatory Activity) is an algorithm that infers sample-specific transcription factor activity from the genome-wide expression or DNA methylation profile of the sample.

Author: Yuting Chen [aut, cre], Andrew Teschendorff [aut]

Maintainer: Yuting Chen <cytwarmmay at hotmail.com>

Citation (from within R, enter citation("SEPIRA")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SEPIRA")

Documentation

HTML R Script Introduction to `SEPIRA`
PDF   Reference Manual
Text   NEWS

Details

biocViews GeneExpression, GeneRegulation, GeneTarget, Network, NetworkInference, Software, Transcription
Version 1.0.0
License GPL-3
Depends R (>= 3.5.0)
Imports limma(>= 3.32.5), corpcor (>= 1.6.9), parallel (>= 3.3.1), stats
LinkingTo
Suggests knitr, rmarkdown, testthat, igraph
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SEPIRA_1.0.0.tar.gz
Windows Binary SEPIRA_1.0.0.zip
Mac OS X 10.11 (El Capitan) SEPIRA_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SEPIRA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SEPIRA
Package Short Url http://bioconductor.org/packages/SEPIRA/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: