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Rvisdiff

Interactive Graphs for Differential Expression


Bioconductor version: Release (3.18)

Creates a muti-graph web page which allows the interactive exploration of differential expression results. The graphical web interface presents results as a table which is integrated with five interactive graphs: MA-plot, volcano plot, box plot, lines plot and cluster heatmap. Graphical aspect and information represented in the graphs can be customized by means of user controls. Final graphics can be exported as PNG format.

Author: Carlos Prieto [aut] , David Barrios [cre, aut]

Maintainer: David Barrios <metal at usal.es>

Citation (from within R, enter citation("Rvisdiff")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Rvisdiff")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rvisdiff")
Visualize Differential Expression results HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataRepresentation, DifferentialExpression, RNASeq, Software, Visualization
Version 1.0.0
In Bioconductor since BioC 3.18 (R-4.3) (< 6 months)
License GPL-2 | GPL-3
Depends R (>= 4.3.0)
Imports edgeR, utils
System Requirements
URL https://github.com/BioinfoUSAL/Rvisdiff/
Bug Reports https://github.com/BioinfoUSAL/Rvisdiff/issues/
See More
Suggests knitr, rmarkdown, DESeq2, limma, SummarizedExperiment, airway, BiocStyle, matrixTests, BiocManager
Linking To
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Depends On Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Rvisdiff_1.0.0.tar.gz
Windows Binary Rvisdiff_1.0.0.zip
macOS Binary (x86_64) Rvisdiff_1.0.0.tgz
macOS Binary (arm64) Rvisdiff_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Rvisdiff
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Rvisdiff
Bioc Package Browser https://code.bioconductor.org/browse/Rvisdiff/
Package Short Url https://bioconductor.org/packages/Rvisdiff/
Package Downloads Report Download Stats