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Bioconductor version: Release (3.18)
Creates a muti-graph web page which allows the interactive exploration of differential expression results. The graphical web interface presents results as a table which is integrated with five interactive graphs: MA-plot, volcano plot, box plot, lines plot and cluster heatmap. Graphical aspect and information represented in the graphs can be customized by means of user controls. Final graphics can be exported as PNG format.
Author: Carlos Prieto [aut] , David Barrios [cre, aut]
Maintainer: David Barrios <metal at usal.es>
Citation (from within R,
enter citation("Rvisdiff")
):
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("Rvisdiff")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rvisdiff")
HTML | R Script | Visualize Differential Expression results |
Reference Manual | ||
Text | NEWS |
biocViews | DataRepresentation, DifferentialExpression, RNASeq, Software, Visualization |
Version | 1.0.0 |
In Bioconductor since | BioC 3.18 (R-4.3) (< 6 months) |
License | GPL-2 | GPL-3 |
Depends | R (>= 4.3.0) |
Imports | edgeR, utils |
LinkingTo | |
Suggests | knitr, rmarkdown, DESeq2, limma, SummarizedExperiment, airway, BiocStyle, matrixTests, BiocManager |
SystemRequirements | |
Enhances | |
URL | https://github.com/BioinfoUSAL/Rvisdiff/ |
BugReports | https://github.com/BioinfoUSAL/Rvisdiff/issues/ |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | Rvisdiff_1.0.0.tar.gz |
Windows Binary | Rvisdiff_1.0.0.zip |
macOS Binary (x86_64) | Rvisdiff_1.0.0.tgz |
macOS Binary (arm64) | Rvisdiff_1.0.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/Rvisdiff |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Rvisdiff |
Bioc Package Browser | https://code.bioconductor.org/browse/Rvisdiff/ |
Package Short Url | https://bioconductor.org/packages/Rvisdiff/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.18 | Source Archive |
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