Rvisdiff

DOI: 10.18129/B9.bioc.Rvisdiff  

Interactive Graphs for Differential Expression

Bioconductor version: Release (3.18)

Creates a muti-graph web page which allows the interactive exploration of differential expression results. The graphical web interface presents results as a table which is integrated with five interactive graphs: MA-plot, volcano plot, box plot, lines plot and cluster heatmap. Graphical aspect and information represented in the graphs can be customized by means of user controls. Final graphics can be exported as PNG format.

Author: Carlos Prieto [aut] , David Barrios [cre, aut]

Maintainer: David Barrios <metal at usal.es>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Rvisdiff")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rvisdiff")

 

HTML	R Script	Visualize Differential Expression results
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataRepresentation, DifferentialExpression, RNASeq, Software, Visualization
Version	1.0.0
In Bioconductor since	BioC 3.18 (R-4.3) (< 6 months)
License	GPL-2 | GPL-3
Depends	R (>= 4.3.0)
Imports	edgeR, utils
LinkingTo
Suggests	knitr, rmarkdown, DESeq2, limma, SummarizedExperiment, airway, BiocStyle, matrixTests, BiocManager
SystemRequirements
Enhances
URL	https://github.com/BioinfoUSAL/Rvisdiff/
BugReports	https://github.com/BioinfoUSAL/Rvisdiff/issues/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Rvisdiff_1.0.0.tar.gz
Windows Binary	Rvisdiff_1.0.0.zip
macOS Binary (x86_64)	Rvisdiff_1.0.0.tgz
macOS Binary (arm64)	Rvisdiff_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Rvisdiff
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Rvisdiff
Bioc Package Browser	https://code.bioconductor.org/browse/Rvisdiff/
Package Short Url	https://bioconductor.org/packages/Rvisdiff/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.18	Source Archive