Rvisdiff
Interactive Graphs for Differential Expression
Bioconductor version: 3.23 · Package version: 1.10.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Creates a muti-graph web page which allows the interactive exploration of differential analysis tests. The graphical web interface presents results as a table which is integrated with five interactive graphs: MA-plot, volcano plot, box plot, lines plot and cluster heatmap. Graphical aspect and information represented in the graphs can be customized by means of user controls. Final graphics can be exported as PNG format.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Rvisdiff")Details
| Maintainer | David Barrios <metal@usal.es> |
| Author | Carlos Prieto [aut] (ORCID: <https://orcid.org/0000-0003-2064-4842>), David Barrios [cre, aut] (ORCID: <https://orcid.org/0000-0003-4465-0200>) |
| License | GPL-2 | GPL-3 |
| URL | https://github.com/BioinfoUSAL/Rvisdiff/ |
| Bug Reports | https://github.com/BioinfoUSAL/Rvisdiff/issues/ |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataRepresentation, DifferentialExpression, RNASeq, Software, Visualization |
| Package Short Url | https://bioconductor.org/packages/Rvisdiff/ |
Citation
From within R, enter citation("Rvisdiff"):
Carlos Prieto, David Barrios. Rvisdiff: Interactive Graphs for Differential Expression. doi:10.18129/B9.bioc.Rvisdiff, R package version 1.10.0, https://bioconductor.org/packages/Rvisdiff.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | Rvisdiff_1.10.0.tar.gz |
| Windows binary (x86_64) | Rvisdiff_1.10.0.zip |
| macOS binary (arm64) | Rvisdiff_1.10.0.tgz |
| macOS binary (x86_64) | Rvisdiff_1.10.0.tgz |
Dependencies
Depends: R (>= 4.5.0)
Imports: edgeR, utils
Suggests: knitr, rmarkdown, DESeq2, limma, SummarizedExperiment, airway, BiocStyle, matrixTests, BiocManager