Rvisdiff

This is the development version of Rvisdiff; for the stable release version, see Rvisdiff.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18

Interactive Graphs for Differential Expression

Bioconductor version: Development (3.24)

Creates a muti-graph web page which allows the interactive exploration of differential analysis tests. The graphical web interface presents results as a table which is integrated with five interactive graphs: MA-plot, volcano plot, box plot, lines plot and cluster heatmap. Graphical aspect and information represented in the graphs can be customized by means of user controls. Final graphics can be exported as PNG format.

Author: Carlos Prieto [aut] ORCID: 0000-0003-2064-4842 , David Barrios [cre, aut] ORCID: 0000-0003-4465-0200

Maintainer: David Barrios <metal at usal.es>

Citation (from within R, enter citation("Rvisdiff")):

Carlos Prieto, David Barrios. Rvisdiff: Interactive Graphs for Differential Expression. doi:10.18129/B9.bioc.Rvisdiff, R package version 1.11.0, https://bioconductor.org/packages/Rvisdiff.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("Rvisdiff")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rvisdiff")

Visualize Differential Expression results	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DataRepresentation, DifferentialExpression, RNASeq, Software, Visualization
Version	1.11.0
In Bioconductor since	BioC 3.18 (R-4.3) (3 years)
License	GPL-2 \| GPL-3
Depends	R (>= 4.5.0)
Imports	edgeR, utils
System Requirements
URL	https://github.com/BioinfoUSAL/Rvisdiff/
Bug Reports	https://github.com/BioinfoUSAL/Rvisdiff/issues/

Suggests	knitr, rmarkdown, DESeq2, limma, SummarizedExperiment, airway, BiocStyle, matrixTests, BiocManager
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Rvisdiff_1.11.0.tar.gz
Windows Binary (x86_64)	Rvisdiff_1.11.0.zip
macOS Binary (big-sur-x86_64)	Rvisdiff_1.11.0.tgz
macOS Binary (sonoma-arm64)	Rvisdiff_1.11.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Rvisdiff
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Rvisdiff
Package Short Url	https://bioconductor.org/packages/Rvisdiff/
Package Downloads Report	Download Stats