RolDE

DOI: 10.18129/B9.bioc.RolDE    

RolDE: Robust longitudinal Differential Expression

Bioconductor version: Release (3.15)

RolDE detects longitudinal differential expression between two conditions in noisy high-troughput data. Suitable even for data with a moderate amount of missing values.RolDE is a composite method, consisting of three independent modules with different approaches to detecting longitudinal differential expression. The combination of these diverse modules allows RolDE to robustly detect varying differences in longitudinal trends and expression levels in diverse data types and experimental settings.

Author: Tommi Valikangas [cre, aut]

Maintainer: Tommi Valikangas <tsvali at utu.fi>

Citation (from within R, enter citation("RolDE")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RolDE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RolDE")

 

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Details

biocViews DifferentialExpression, Proteomics, Regression, Software, StatisticalMethod, TimeCourse
Version 1.0.0
In Bioconductor since BioC 3.15 (R-4.2) (< 6 months)
License GPL-3
Depends R (>= 4.2.0)
Imports stats, methods, ROTS, matrixStats, foreach, parallel, doParallel, doRNG, rngtools, SummarizedExperiment, nlme, qvalue, grDevices, graphics, utils
LinkingTo
Suggests knitr, printr, rmarkdown, testthat
SystemRequirements
Enhances
URL https://github.com/elolab/RolDE
BugReports https://github.com/elolab/RolDE/issues
Depends On Me
Imports Me
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RolDE_1.0.0.tar.gz
Windows Binary RolDE_1.0.0.zip (64-bit only)
macOS 10.13 (High Sierra) RolDE_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RolDE
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RolDE
Package Short Url https://bioconductor.org/packages/RolDE/
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