RolDE
RolDE: Robust longitudinal Differential Expression
Bioconductor version: 3.24 · Package version: 1.17.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
RolDE detects longitudinal differential expression between two conditions in noisy high-troughput data. Suitable even for data with a moderate amount of missing values.RolDE is a composite method, consisting of three independent modules with different approaches to detecting longitudinal differential expression. The combination of these diverse modules allows RolDE to robustly detect varying differences in longitudinal trends and expression levels in diverse data types and experimental settings.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RolDE")Details
| Maintainer | Medical Bioinformatics Centre <mbc@utu.fi> |
| Author | Tommi Valikangas [aut], Medical Bioinformatics Centre [cre] |
| License | GPL-3 |
| URL | https://github.com/elolab/RolDE |
| Bug Reports | https://github.com/elolab/RolDE/issues |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | DifferentialExpression, Proteomics, Regression, Software, StatisticalMethod, TimeCourse |
| Package Short Url | https://bioconductor.org/packages/RolDE/ |
Citation
From within R, enter citation("RolDE"):
Tommi Valikangas. RolDE: RolDE: Robust longitudinal Differential Expression. doi:10.18129/B9.bioc.RolDE, R package version 1.17.0, https://bioconductor.org/packages/RolDE.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | RolDE_1.17.0.tar.gz |
| Windows binary (x86_64) | RolDE_1.17.0.zip |
| macOS binary (arm64) | RolDE_1.17.0.tgz |
| macOS binary (x86_64) | RolDE_1.17.0.tgz |
Dependencies
Depends: R (>= 4.2.0)
Imports: stats, methods, ROTS, matrixStats, foreach, parallel, doParallel, doRNG, rngtools, SummarizedExperiment, nlme, qvalue, grDevices, graphics, utils