Rhtslib
This is the released version of Rhtslib; for the devel version, see Rhtslib.
All Bioconductor versions of Rhtslib
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1
HTSlib high-throughput sequencing library as an R package
Bioconductor version: 3.23 · Package version: 3.8.0
This package provides version 1.18 of the 'HTSlib' C library for high-throughput sequence analysis. The package is primarily useful to developers of other R packages who wish to make use of HTSlib. Motivation and instructions for use of this package are in the vignette, vignette(package="Rhtslib", "Rhtslib").
Author: Nathaniel Hayden [led, aut], Martin Morgan [aut], Hervé Pagès [aut, cre], Tomas Kalibera [ctb], Jeroen Ooms [ctb]
Maintainer: Hervé Pagès <hpages.on.github at gmail.com>
Citation
From within R, enter citation("Rhtslib"):
Nathaniel Hayden, Martin Morgan, Hervé Pagès. Rhtslib: HTSlib high-throughput sequencing library as an R package. doi:10.18129/B9.bioc.Rhtslib, R package version 3.8.0, https://bioconductor.org/packages/Rhtslib.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Rhtslib")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 3.8.0 |
| License | LGPL (>= 2) |
| URL | https://bioconductor.org/packages/Rhtslib http://www.htslib.org/ |
| Bug Reports | https://github.com/Bioconductor/Rhtslib/issues |
| System Requirements | libbz2 & liblzma & libcurl (with header files), GNU make |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.1 (R-3.2) (11 years) |
| Downloads rank | 31 of 2,418 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataImport, Sequencing, Software |
| Package Short Url | https://bioconductor.org/packages/Rhtslib/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rhtslib")| Motivation and use of Rhtslib | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | Rhtslib_3.8.0.tar.gz |
| Windows binary (x86_64) | Rhtslib_3.8.0.zip |
| macOS binary (arm64) | Rhtslib_3.8.0.tgz |
| macOS binary (x86_64) | Rhtslib_3.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Rhtslib |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Rhtslib |
| Package Downloads Report | Download Stats |
Reverse dependencies
Imports Me (6): deepSNV, diffHic, maftools, mitoClone2, scPipe, stPipe
Links To Me (22): bamsignals, csaw, deepSNV, DiffBind, diffHic, epialleleR, FLAMES, h5vc, iscream, jackalope, maftools, methylKit, mitoClone2, podkat, QuasR, raer, Rfastp, Rsamtools, scPipe, ShortRead, stPipe, VariantAnnotation