Rhtslib
HTSlib high-throughput sequencing library as an R package
Bioconductor version: Release (3.19)
This package provides version 1.18 of the 'HTSlib' C library for high-throughput sequence analysis. The package is primarily useful to developers of other R packages who wish to make use of HTSlib. Motivation and instructions for use of this package are in the vignette, vignette(package="Rhtslib", "Rhtslib").
Author: Nathaniel Hayden [led, aut], Martin Morgan [aut], Hervé Pagès [aut, cre], Tomas Kalibera [ctb], Jeroen Ooms [ctb]
Maintainer: Hervé Pagès <hpages.on.github at gmail.com>
citation("Rhtslib")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Rhtslib")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rhtslib")
Motivation and use of Rhtslib | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DataImport, Sequencing, Software |
Version | 3.0.0 |
In Bioconductor since | BioC 3.1 (R-3.2) (9.5 years) |
License | LGPL (>= 2) |
Depends | |
Imports | tools, zlibbioc |
System Requirements | libbz2 & liblzma & libcurl (with header files), GNU make |
URL | https://bioconductor.org/packages/Rhtslib http://www.htslib.org/ |
Bug Reports | https://github.com/Bioconductor/Rhtslib/issues |
See More
Suggests | knitr, rmarkdown, BiocStyle |
Linking To | zlibbioc |
Enhances | |
Depends On Me | |
Imports Me | deepSNV, diffHic, maftools, mitoClone2, scPipe |
Suggests Me | |
Links To Me | bamsignals, csaw, deepSNV, DiffBind, diffHic, epialleleR, FLAMES, h5vc, maftools, methylKit, mitoClone2, podkat, QuasR, raer, Rfastp, Rsamtools, scPipe, ShortRead, TransView, VariantAnnotation, jackalope |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | Rhtslib_3.0.0.tar.gz |
Windows Binary | Rhtslib_3.0.0.zip |
macOS Binary (x86_64) | Rhtslib_3.0.0.tgz |
macOS Binary (arm64) | Rhtslib_3.0.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/Rhtslib |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Rhtslib |
Bioc Package Browser | https://code.bioconductor.org/browse/Rhtslib/ |
Package Short Url | https://bioconductor.org/packages/Rhtslib/ |
Package Downloads Report | Download Stats |