RBioFormats
This is the released version of RBioFormats; for the devel version, see RBioFormats.
R interface to Bio-Formats
Bioconductor version: Release (3.23)
An R package which interfaces the OME Bio-Formats Java library to allow reading of proprietary microscopy image data and metadata.
Author: Andrzej Oleś [aut, cre] 
, John Lee [ctb]
Maintainer: Andrzej Oleś <andrzej.oles at gmail.com>
citation("RBioFormats")):Andrzej Oleś. RBioFormats: R interface to Bio-Formats. doi:10.18129/B9.bioc.RBioFormats, R package version 1.12.0, https://bioconductor.org/packages/RBioFormats.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RBioFormats")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RBioFormats")| RBioFormats: an R interface to the Bio-Formats library | HTML | R Script |
| Reference Manual |
Details
| biocViews | DataImport, Software |
| Version | 1.12.0 |
| In Bioconductor since | BioC 3.17 (R-4.3) (3.5 years) |
| License | GPL-3 |
| Depends | |
| Imports | EBImage, methods, rJava (>= 0.9-6), S4Vectors, stats |
| System Requirements | Java (>= 1.7) |
| URL | https://github.com/aoles/RBioFormats |
| Bug Reports | https://github.com/aoles/RBioFormats/issues |
See More
| Suggests | BiocStyle, knitr, testthat, xml2 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | alabaster.sfe, islify, scider, SpatialOmicsOverlay |
| Suggests Me | ImageArray, SpatialFeatureExperiment, Voyager |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RBioFormats_1.12.0.tar.gz |
| Windows Binary (x86_64) | RBioFormats_1.12.0.zip |
| macOS Binary (big-sur-x86_64) | RBioFormats_1.12.0.tgz |
| macOS Binary (sonoma-arm64) | RBioFormats_1.12.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/RBioFormats |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RBioFormats |
| Package Short Url | https://bioconductor.org/packages/RBioFormats/ |
| Package Downloads Report | Download Stats |