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This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

Effective mobility scale transformation of CE-MS(/MS) data

Bioconductor version: Release (3.19)

MobilityTransformR collects a tool set for effective mobility scale transformation of CE-MS/MS data in order to increase reproducibility. It provides functionality to determine the migration times from mobility markers that have been added to the analysis and performs the transformation based on these markers. MobilityTransformR supports the conversion of numeric vectors, Spectra-objects, and MSnOnDiskExp.

Author: Liesa Salzer [cre, aut]

Maintainer: Liesa Salzer <liesa.salzer at>

Citation (from within R, enter citation("MobilityTransformR")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


Reference Manual PDF


biocViews Infrastructure, MassSpectrometry, Metabolomics, Preprocessing, Proteomics, Software
Version 1.8.0
In Bioconductor since BioC 3.15 (R-4.2) (2 years)
License Artistic-2.0
Depends MSnbase, R (>= 4.2)
Imports xcms, MetaboCoreUtils, Spectra
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Suggests testthat, msdata(>= 0.35.3), knitr (>= 1.1.0), roxygen2, BiocStyle(>= 2.5.19), rmarkdown
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