MetaNeighbor

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.23 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see MetaNeighbor.

All versions

3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7

Single cell replicability analysis

Bioconductor version: Release (3.23)

MetaNeighbor allows users to quantify cell type replicability across datasets using neighbor voting.

Author: Megan Crow [aut, cre], Sara Ballouz [ctb], Manthan Shah [ctb], Stephan Fischer [ctb], Jesse Gillis [aut]

Maintainer: Stephan Fischer <fischer at cshl.edu>

Citation (from within R, enter citation("MetaNeighbor")):

Megan Crow, Jesse Gillis. MetaNeighbor: Single cell replicability analysis. doi:10.18129/B9.bioc.MetaNeighbor, R package version 1.32.0, https://bioconductor.org/packages/MetaNeighbor.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MetaNeighbor")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	GO, GeneExpression, ImmunoOncology, MultipleComparison, SingleCell, Software, Transcriptomics
Version	1.32.0
In Bioconductor since	BioC 3.7 (R-3.5) (8.5 years)
License	MIT + file LICENSE
Depends	R (>= 3.5)
Imports	grDevices, graphics, methods, stats (>= 3.4), utils (>= 3.4), Matrix (>= 1.2), matrixStats (>= 0.54), beanplot (>= 1.2), gplots (>= 3.0.1), RColorBrewer (>= 1.1.2), SummarizedExperiment (>= 1.12), SingleCellExperiment, igraph, dplyr, tidyr, tibble, ggplot2
System Requirements
URL

Suggests	knitr (>= 1.17), rmarkdown (>= 1.6), testthat (>= 1.0.2), UpSetR
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Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/MetaNeighbor
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MetaNeighbor
Package Short Url	https://bioconductor.org/packages/MetaNeighbor/
Package Downloads Report	Download Stats