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MetaNeighbor

Single cell replicability analysis


Bioconductor version: Release (3.18)

MetaNeighbor allows users to quantify cell type replicability across datasets using neighbor voting.

Author: Megan Crow [aut, cre], Sara Ballouz [ctb], Manthan Shah [ctb], Stephan Fischer [ctb], Jesse Gillis [aut]

Maintainer: Stephan Fischer <fischer at cshl.edu>

Citation (from within R, enter citation("MetaNeighbor")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MetaNeighbor")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MetaNeighbor")
MetaNeighbor user guide PDF R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews GO, GeneExpression, ImmunoOncology, MultipleComparison, SingleCell, Software, Transcriptomics
Version 1.22.0
In Bioconductor since BioC 3.7 (R-3.5) (6 years)
License MIT + file LICENSE
Depends R (>= 3.5)
Imports grDevices, graphics, methods, stats (>= 3.4), utils (>= 3.4), Matrix (>= 1.2), matrixStats (>= 0.54), beanplot (>= 1.2), gplots (>= 3.0.1), RColorBrewer (>= 1.1.2), SummarizedExperiment(>= 1.12), SingleCellExperiment, igraph, dplyr, tidyr, tibble, ggplot2
System Requirements
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Suggests knitr (>= 1.17), rmarkdown (>= 1.6), testthat (>= 1.0.2), UpSetR
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MetaNeighbor_1.22.0.tar.gz
Windows Binary MetaNeighbor_1.22.0.zip
macOS Binary (x86_64) MetaNeighbor_1.22.0.tgz
macOS Binary (arm64) MetaNeighbor_1.22.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MetaNeighbor
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MetaNeighbor
Bioc Package Browser https://code.bioconductor.org/browse/MetaNeighbor/
Package Short Url https://bioconductor.org/packages/MetaNeighbor/
Package Downloads Report Download Stats