LPE
Methods for analyzing microarray data using Local Pooled Error (LPE) method
Bioconductor version: 3.23 · Package version: 1.86.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
This LPE library is used to do significance analysis of microarray data with small number of replicates. It uses resampling based FDR adjustment, and gives less conservative results than traditional 'BH' or 'BY' procedures. Data accepted is raw data in txt format from MAS4, MAS5 or dChip. Data can also be supplied after normalization. LPE library is primarily used for analyzing data between two conditions. To use it for paired data, see LPEP library. For using LPE in multiple conditions, use HEM library.
DOI: 10.18129/B9.bioc.LPE
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("LPE")Details
| Maintainer | Nitin Jain <emailnitinjain@gmail.com> |
| Author | Nitin Jain <emailnitinjain@gmail.com>, Michael O'Connell <michaelo@warath.com>, Jae K. Lee <jaeklee@virginia.edu>. Includes R source code contributed by HyungJun Cho <hcho@virginia.edu> |
| License | LGPL |
| URL | http://www.r-project.org, http://www.healthsystem.virginia.edu/internet/hes/biostat/bioinformatics/, http://sourceforge.net/projects/r-lpe/ |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | DifferentialExpression, Microarray, Software |
| Package Short Url | https://bioconductor.org/packages/LPE/ |
Citation
From within R, enter citation("LPE"):
Nitin Jain, Michael O'Connell, Jae K. Lee. Includes R source code contributed by HyungJun Cho. LPE: Methods for analyzing microarray data using Local Pooled Error (LPE) method. doi:10.18129/B9.bioc.LPE, R package version 1.86.0, https://bioconductor.org/packages/LPE.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | LPE_1.86.0.tar.gz |
| Windows binary (x86_64) | LPE_1.86.0.zip |
| macOS binary (arm64) | LPE_1.86.0.tgz |
| macOS binary (x86_64) | LPE_1.86.0.tgz |
Dependencies
Depends: R (>= 2.10)
Imports: stats