DOI: 10.18129/B9.bioc.ImmuneSpaceR    

A Thin Wrapper around the ImmuneSpace Database

Bioconductor version: Release (3.6)

Provides a convenient API for accessing data sets within ImmuneSpace (, the data repository and analysis platform of the Human Immunology Project Consortium (HIPC).

Author: Greg Finak [aut], Renan Sauteraud [aut], Mike Jiang [aut], Gil Guday [aut], Leo Dashevskiy [aut], Evan Henrich [aut], Ju Yeong Kim [aut], Raphael Gottardo [aut], ImmuneSpace Package Maintainer [cre, cph]

Maintainer: ImmuneSpace Package Maintainer <immunespace at>

Citation (from within R, enter citation("ImmuneSpaceR")):


To install this package, start R and enter:

## try http:// if https:// URLs are not supported


HTML R Script An introduction to the ImmuneSpaceR package
HTML R Script Downloading tables with getDataset
HTML R Script Handling expression matrices with ImmuneSpaceR
HTML R Script Reproducing an online report using ImmuneSpaceR: Correlation between HAI and flow cytometry in SDY269
HTML R Script Reproducing an online report using ImmuneSpaceR: Correlation of HAI/virus neutralizition titer and cell counts in SDY144
HTML R Script Reproducing an online report using ImmuneSpaceR: Plasmablast abundance in SDY180
PDF   Reference Manual
Text   NEWS


biocViews DataImport, DataRepresentation, Software, ThirdPartyClient
Version 1.6.2
In Bioconductor since BioC 3.3 (R-3.3) (2 years)
License GPL-2
Imports utils, methods, data.table, httr, Rlabkey (>= 2.1.136), Biobase, pheatmap, ggplot2, scales, stats, gtools, gplots, reshape2, plotly, heatmaply (>= 0.7.0), rjson, rmarkdown, preprocessCore, parallel
Suggests knitr, testthat
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ImmuneSpaceR_1.6.2.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) ImmuneSpaceR_1.6.2.tgz
Source Repository git clone
Package Short Url
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Old Source Packages for BioC 3.6 Source Archive

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