HPAanalyze

DOI: 10.18129/B9.bioc.HPAanalyze    

Retrieve and analyze data from the Human Protein Atlas

Bioconductor version: Release (3.9)

Provide functions for retrieving, exploratory analyzing and visualizing the Human Protein Atlas data.

Author: Anh Nhat Tran [aut, cre]

Maintainer: Anh Nhat Tran <trannhatanh89 at gmail.com>

Citation (from within R, enter citation("HPAanalyze")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HPAanalyze")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HPAanalyze")

 

HTML R Script Code for figures from HPAanalyze paper
HTML R Script HPAanalyze in-depth: Working with Human Protein Atlas (HPA) data in R
HTML R Script HPAanalyze quick start guide: Acquire and visualize the Human Protein Atlas (HPA) data in one function
HTML R Script HPAanalyze use case: Combine with your Human Protein Atlas (HPA) queries
HTML R Script HPAanalyze use case: Export Human Protein Atlas (HPA) data as JSON
HTML R Script HPAanalyze use case: Working with Human Protein Atlas (HPA) xml files offline
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews CellBiology, Proteomics, Software, Visualization
Version 1.2.1
In Bioconductor since BioC 3.8 (R-3.5) (1 year)
License GPL-3 + file LICENSE
Depends R (>= 3.5.0)
Imports dplyr, openxlsx, ggplot2, readr, tibble, xml2, tidyr, stats, utils, hpar, gridExtra
LinkingTo
Suggests knitr, rmarkdown, devtools, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HPAanalyze_1.2.1.tar.gz
Windows Binary HPAanalyze_1.2.1.zip
Mac OS X 10.11 (El Capitan) HPAanalyze_1.2.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/HPAanalyze
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HPAanalyze
Package Short Url http://bioconductor.org/packages/HPAanalyze/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive

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