DOI: 10.18129/B9.bioc.HPAanalyze  

This is the development version of HPAanalyze; for the stable release version, see HPAanalyze.

Retrieve and analyze data from the Human Protein Atlas

Bioconductor version: Development (3.19)

Provide functions for retrieving, exploratory analyzing and visualizing the Human Protein Atlas data.

Author: Anh Nhat Tran [aut, cre]

Maintainer: Anh Nhat Tran <trannhatanh89 at gmail.com>

Citation (from within R, enter citation("HPAanalyze")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script 1. Quick-start guide: Acquire and visualize the Human Protein Atlas (HPA) data in one function with HPAanalyze
HTML R Script 2. In-depth: Working with Human Protein Atlas (HPA) data in R with HPAanalyze
HTML R Script 3. Tutorial: Combine HPAanalyze with your Human Protein Atlas (HPA) queries
HTML R Script 4. Tutorial: Working with Human Protein Atlas (HPA) xml files offline
HTML R Script 5. Tutorial: Export Human Protein Atlas (HPA) data as JSON
HTML R Script 6. Tutorial: Download histology images from the Human Protein Atlas
HTML R Script 99. Code for figures from HPAanalyze paper
PDF   Reference Manual
Text   NEWS


biocViews CellBiology, Proteomics, Software, Visualization
Version 1.21.0
In Bioconductor since BioC 3.8 (R-3.5) (5 years)
License GPL-3 + file LICENSE
Depends R (>= 3.5.0)
Imports dplyr, openxlsx, ggplot2, tibble, xml2, stats, utils, gridExtra
Suggests knitr, rmarkdown, markdown, devtools, BiocStyle
URL https://github.com/anhtr/HPAanalyze
BugReports https://github.com/anhtr/HPAanalyze/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HPAanalyze_1.21.0.tar.gz
Windows Binary HPAanalyze_1.21.0.zip
macOS Binary (x86_64) HPAanalyze_1.21.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/HPAanalyze
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HPAanalyze
Bioc Package Browser https://code.bioconductor.org/browse/HPAanalyze/
Package Short Url https://bioconductor.org/packages/HPAanalyze/
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: