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Guitar

Guitar


Bioconductor version: Release (3.18)

The package is designed for visualization of RNA-related genomic features with respect to the landmarks of RNA transcripts, i.e., transcription starting site, start codon, stop codon and transcription ending site.

Author: Xiao Du, Hui Liu, Lin Zhang, Jia Meng

Maintainer: Jia Meng <jia.meng at xjtlu.edu.cn>

Citation (from within R, enter citation("Guitar")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Guitar")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Guitar")
Guitar PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Alignment, DataImport, MethylSeq, QualityControl, RNASeq, Sequencing, Software, SplicedAlignment, Transcription
Version 2.18.0
In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)
License GPL-2
Depends GenomicFeatures, rtracklayer, AnnotationDbi, GenomicRanges, magrittr, ggplot2, methods, stats, utils, knitr, dplyr
Imports
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Guitar_2.18.0.tar.gz
Windows Binary Guitar_2.18.0.zip
macOS Binary (x86_64) Guitar_2.18.0.tgz
macOS Binary (arm64) Guitar_2.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Guitar
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Guitar
Bioc Package Browser https://code.bioconductor.org/browse/Guitar/
Package Short Url https://bioconductor.org/packages/Guitar/
Package Downloads Report Download Stats