To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GenomicDataCommons")

In most cases, you don't need to download the package archive at all.

GenomicDataCommons

 

   

NIH / NCI Genomic Data Commons Access

Bioconductor version: Release (3.5)

Programmatically access the NIH / NCI Genomic Data Commons RESTful service.

Author: Martin Morgan [aut], Davis Sean [aut, cre]

Maintainer: Davis Sean <sdavis2 at mail.nih.gov>

Citation (from within R, enter citation("GenomicDataCommons")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GenomicDataCommons")

Documentation

HTML R Script Introduction to Accessing the NCI Genomic Data Commons
PDF   Reference Manual

Details

biocViews DataImport, Sequencing, Software
Version 1.0.0
In Bioconductor since BioC 3.5 (R-3.4) (< 6 months)
License Artistic-2.0
Depends R (>= 3.4.0), magrittr
Imports stats, httr, xml2, jsonlite, utils, lazyeval, readr, shiny, miniUI, data.table, GenomicRanges, IRanges
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, DT, testthat, listviewer, ggplot2, GenomicAlignments, Rsamtools
SystemRequirements
Enhances
URL
BugReports https://github.com/Bioconductor/GenomicDataCommons/issues/new
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source GenomicDataCommons_1.0.0.tar.gz
Windows Binary GenomicDataCommons_1.0.0.zip
Mac OS X 10.11 (El Capitan) GenomicDataCommons_1.0.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/GenomicDataCommons/tree/release-3.5
Package Short Url http://bioconductor.org/packages/GenomicDataCommons/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: