To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GenomicDataCommons")

In most cases, you don't need to download the package archive at all.

GenomicDataCommons

DOI: 10.18129/B9.bioc.GenomicDataCommons    

NIH / NCI Genomic Data Commons Access

Bioconductor version: Release (3.5)

Programmatically access the NIH / NCI Genomic Data Commons RESTful service.

Author: Martin Morgan [aut], Davis Sean [aut, cre]

Maintainer: Davis Sean <sdavis2 at mail.nih.gov>

Citation (from within R, enter citation("GenomicDataCommons")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GenomicDataCommons")

Documentation

HTML R Script Introduction to Accessing the NCI Genomic Data Commons
PDF   Reference Manual

Details

biocViews DataImport, Sequencing, Software
Version 1.0.5
In Bioconductor since BioC 3.5 (R-3.4) (< 6 months)
License Artistic-2.0
Depends R (>= 3.4.0), magrittr
Imports stats, httr, xml2, jsonlite, utils, lazyeval, readr, data.table, GenomicRanges, IRanges
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, DT, testthat, listviewer, ggplot2, GenomicAlignments, Rsamtools
SystemRequirements
Enhances
URL https://bioconductor.org/packages/GenomicDataCommons http://github.com/Bioconductor/GenomicDataCommons
BugReports https://github.com/Bioconductor/GenomicDataCommons/issues/new
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GenomicDataCommons_1.0.5.tar.gz
Windows Binary GenomicDataCommons_1.0.5.zip
Mac OS X 10.11 (El Capitan) GenomicDataCommons_1.0.5.tgz
Source Repository git clone https://git.bioconductor.org/packages/GenomicDataCommons
Package Short Url http://bioconductor.org/packages/GenomicDataCommons/
Package Downloads Report Download Stats

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