GeneOverlap

This is the released version of GeneOverlap; for the devel version, see GeneOverlap.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14

Test and visualize gene overlaps

Bioconductor version: Release (3.23)

Test two sets of gene lists and visualize the results.

Author: Li Shen, Icahn School of Medicine at Mount Sinai <shenli.sam at gmail.com>

Maintainer: Ant<c3><b3>nio Miguel de Jesus Domingues, Max-Planck Institute for Cell Biology and Genetics <amjdomingues at gmail.com>

Citation (from within R, enter citation("GeneOverlap")):

Li Shen, Icahn School of Medicine at Mount Sinai. GeneOverlap: Test and visualize gene overlaps. doi:10.18129/B9.bioc.GeneOverlap, R package version 1.48.0, https://bioconductor.org/packages/GeneOverlap.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GeneOverlap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GeneOverlap")

Testing and visualizing gene overlaps with the "GeneOverlap" package	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	MultipleComparison, Software, Visualization
Version	1.48.0
In Bioconductor since	BioC 2.14 (R-3.1) (12.5 years)
License	GPL-3
Depends
Imports	stats, RColorBrewer, gplots, methods
System Requirements
URL	http://shenlab-sinai.github.io/shenlab-sinai/

Suggests	RUnit, BiocGenerics, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GeneOverlap_1.48.0.tar.gz
Windows Binary (x86_64)	GeneOverlap_1.48.0.zip
macOS Binary (big-sur-x86_64)	GeneOverlap_1.48.0.tgz
macOS Binary (sonoma-arm64)	GeneOverlap_1.48.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GeneOverlap
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GeneOverlap
Package Short Url	https://bioconductor.org/packages/GeneOverlap/
Package Downloads Report	Download Stats