GeneOverlap

DOI: 10.18129/B9.bioc.GeneOverlap    

This is the development version of GeneOverlap; to use it, please install the devel version of Bioconductor.

Test and visualize gene overlaps

Bioconductor version: Development (3.10)

Test two sets of gene lists and visualize the results.

Author: Li Shen, Mount Sinai <shenli.sam at gmail.com>

Maintainer: Li Shen, Mount Sinai <shenli.sam at gmail.com>

Citation (from within R, enter citation("GeneOverlap")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("GeneOverlap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GeneOverlap")

 

PDF R Script Testing and visualizing gene overlaps with the "GeneOverlap" package
PDF   Reference Manual

Details

biocViews MultipleComparison, Software, Visualization
Version 1.21.0
In Bioconductor since BioC 2.14 (R-3.1) (5 years)
License GPL-3
Depends
Imports stats, RColorBrewer, gplots, methods
LinkingTo
Suggests RUnit, BiocGenerics, BiocStyle
SystemRequirements
Enhances
URL http://shenlab-sinai.github.io/shenlab-sinai/
Depends On Me
Imports Me CEMiTool
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GeneOverlap_1.21.0.tar.gz
Windows Binary GeneOverlap_1.21.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) GeneOverlap_1.21.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GeneOverlap
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GeneOverlap
Package Short Url http://bioconductor.org/packages/GeneOverlap/
Package Downloads Report Download Stats

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