GateFinder

DOI: 10.18129/B9.bioc.GateFinder    

Projection-based Gating Strategy Optimization for Flow and Mass Cytometry

Bioconductor version: Release (3.7)

Given a vector of cluster memberships for a cell population, identifies a sequence of gates (polygon filters on 2D scatter plots) for isolation of that cell type.

Author: Nima Aghaeepour <naghaeep at gmail.com>, Erin F. Simonds <erin.simonds at gmail.com>

Maintainer: Nima Aghaeepour <naghaeep at gmail.com>

Citation (from within R, enter citation("GateFinder")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GateFinder")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GateFinder")

 

PDF R Script GateFinder
PDF   Reference Manual
Text   NEWS

Details

biocViews CellBiology, Clustering, FlowCytometry, Software
Version 1.0.0
License Artistic-2.0
Depends
Imports splancs, mvoutlier, methods, stats, diptest, flowCore, flowFP
LinkingTo
Suggests RUnit, flowUtils, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GateFinder_1.0.0.tar.gz
Windows Binary GateFinder_1.0.0.zip
Mac OS X 10.11 (El Capitan) GateFinder_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GateFinder
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GateFinder
Package Short Url http://bioconductor.org/packages/GateFinder/
Package Downloads Report Download Stats

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