GateFinder
Projection-based Gating Strategy Optimization for Flow and Mass Cytometry
Bioconductor version: 3.23 · Package version: 1.32.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Given a vector of cluster memberships for a cell population, identifies a sequence of gates (polygon filters on 2D scatter plots) for isolation of that cell type.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GateFinder")Details
| Maintainer | Nima Aghaeepour <naghaeep@gmail.com> |
| Author | Nima Aghaeepour <naghaeep@gmail.com>, Erin F. Simonds <erin.simonds@gmail.com> |
| License | Artistic-2.0 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | CellBiology, Clustering, FlowCytometry, ImmunoOncology, Software |
| Package Short Url | https://bioconductor.org/packages/GateFinder/ |
Citation
From within R, enter citation("GateFinder"):
Nima Aghaeepour, Erin F. Simonds. GateFinder: Projection-based Gating Strategy Optimization for Flow and Mass Cytometry. doi:10.18129/B9.bioc.GateFinder, R package version 1.32.0, https://bioconductor.org/packages/GateFinder.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | GateFinder_1.32.0.tar.gz |
| Windows binary (x86_64) | GateFinder_1.32.0.zip |
| macOS binary (arm64) | GateFinder_1.32.0.tgz |
| macOS binary (x86_64) | GateFinder_1.32.0.tgz |