GOSim

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.19 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see GOSim.

Computation of functional similarities between GO terms and gene products; GO enrichment analysis


Bioconductor version: Release (3.19)

This package implements several functions useful for computing similarities between GO terms and gene products based on their GO annotation. Moreover it allows for computing a GO enrichment analysis

Author: Holger Froehlich <frohlich at bit.uni-bonn.de>

Maintainer: Holger Froehlich <frohlich at bit.uni-bonn.de>

Citation (from within R, enter citation("GOSim")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GOSim")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews Clustering, GO, Pathways, Software
Version 1.42.0
In Bioconductor since BioC 2.13 (R-3.0) (11 years)
License GPL (>= 2)
Depends GO.db, annotate
Imports org.Hs.eg.db, AnnotationDbi, topGO, cluster, flexmix, RBGL, graph, Matrix, corpcor, Rcpp
System Requirements
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Suggests
Linking To Rcpp
Enhances igraph
Depends On Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary (x86_64) GOSim_1.42.0.zip
macOS Binary (x86_64) GOSim_1.42.0.tgz
macOS Binary (arm64) GOSim_1.42.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GOSim
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GOSim
Package Short Url https://bioconductor.org/packages/GOSim/
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