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GEOsubmission

Prepares microarray data for submission to GEO


Bioconductor version: Release (3.18)

Helps to easily submit a microarray dataset and the associated sample information to GEO by preparing a single file for upload (direct deposit).

Author: Alexandre Kuhn <alexandre.m.kuhn at gmail.com>

Maintainer: Alexandre Kuhn <alexandre.m.kuhn at gmail.com>

Citation (from within R, enter citation("GEOsubmission")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GEOsubmission")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GEOsubmission")
GEOsubmission Overview PDF R Script
Reference Manual PDF

Details

biocViews Microarray, Software
Version 1.54.0
In Bioconductor since BioC 2.6 (R-2.11) (14 years)
License GPL (>= 2)
Depends
Imports affy, Biobase, utils
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GEOsubmission_1.54.0.tar.gz
Windows Binary GEOsubmission_1.54.0.zip
macOS Binary (x86_64) GEOsubmission_1.54.0.tgz
macOS Binary (arm64) GEOsubmission_1.54.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GEOsubmission
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GEOsubmission
Bioc Package Browser https://code.bioconductor.org/browse/GEOsubmission/
Package Short Url https://bioconductor.org/packages/GEOsubmission/
Package Downloads Report Download Stats