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GCSscore

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.18 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see GCSscore.

GCSscore: an R package for microarray analysis for Affymetrix/Thermo Fisher arrays


Bioconductor version: Release (3.18)

For differential expression analysis of 3'IVT and WT-style microarrays from Affymetrix/Thermo-Fisher. Based on S-score algorithm originally described by Zhang et al 2002.

Author: Guy M. Harris & Shahroze Abbas & Michael F. Miles

Maintainer: Guy M. Harris <harrisgm at vcu.edu>

Citation (from within R, enter citation("GCSscore")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GCSscore")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews DataImport, DifferentialExpression, Microarray, OneChannel, ProprietaryPlatforms, Software
Version 1.16.0
In Bioconductor since BioC 3.10 (R-3.6) (4.5 years)
License GPL (>=3)
Depends R (>= 3.6)
Imports BiocManager, Biobase, utils, methods, RSQLite, devtools, dplR, stringr, graphics, stats, affxparser, data.table
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Suggests siggenes, GEOquery, R.utils
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary GCSscore_1.16.0.zip (64-bit only)
macOS Binary (x86_64) GCSscore_1.16.0.tgz
macOS Binary (arm64) GCSscore_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GCSscore
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GCSscore
Package Short Url https://bioconductor.org/packages/GCSscore/
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