DOI: 10.18129/B9.bioc.EBSeq  

An R package for gene and isoform differential expression analysis of RNA-seq data

Bioconductor version: Release (3.18)

Differential Expression analysis at both gene and isoform level using RNA-seq data

Author: Xiuyu Ma [cre, aut], Ning Leng [aut], Christina Kendziorski [ctb], Michael A. Newton [ctb]

Maintainer: Xiuyu Ma <watsonforfun at gmail.com>

Citation (from within R, enter citation("EBSeq")):


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PDF R Script EBSeq Vignette
PDF   Reference Manual
Text   NEWS


biocViews DifferentialExpression, ImmunoOncology, MultipleComparison, RNASeq, Sequencing, Software, StatisticalMethod
Version 2.0.0
In Bioconductor since BioC 2.13 (R-3.0) (10 years)
License Artistic-2.0
Depends blockmodeling, gplots, testthat, R (>= 3.0.0)
Imports Rcpp (>= 0.12.11), RcppEigen (>=
LinkingTo Rcpp, RcppEigen, BH
SystemRequirements c++11
Depends On Me EBSeqHMM, Oscope
Imports Me DEsubs, scDD, scDDboost
Suggests Me compcodeR
Links To Me
Build Report  

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Source Package EBSeq_2.0.0.tar.gz
Windows Binary EBSeq_2.0.0.zip
macOS Binary (x86_64) EBSeq_2.0.0.tgz
macOS Binary (arm64) EBSeq_2.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/EBSeq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/EBSeq
Bioc Package Browser https://code.bioconductor.org/browse/EBSeq/
Package Short Url https://bioconductor.org/packages/EBSeq/
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