Oscope
Oscope - A statistical pipeline for identifying oscillatory genes in unsynchronized single cell RNA-seq
Bioconductor version: 3.23 · Package version: 1.42.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Oscope is a statistical pipeline developed to identifying and recovering the base cycle profiles of oscillating genes in an unsynchronized single cell RNA-seq experiment. The Oscope pipeline includes three modules: a sine model module to search for candidate oscillator pairs; a K-medoids clustering module to cluster candidate oscillators into groups; and an extended nearest insertion module to recover the base cycle order for each oscillator group.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Oscope")Details
| Maintainer | Ning Leng <lengning1@gmail.com> |
| Author | Ning Leng |
| License | Artistic-2.0 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | GeneExpression, ImmunoOncology, RNASeq, Sequencing, Software, StatisticalMethod |
| Package Short Url | https://bioconductor.org/packages/Oscope/ |
Citation
From within R, enter citation("Oscope"):
Ning Leng. Oscope: Oscope - A statistical pipeline for identifying oscillatory genes in unsynchronized single cell RNA-seq. doi:10.18129/B9.bioc.Oscope, R package version 1.42.0, https://bioconductor.org/packages/Oscope.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | Oscope_1.42.0.tar.gz |
| Windows binary (x86_64) | Oscope_1.42.0.zip |
| macOS binary (arm64) | Oscope_1.42.0.tgz |
| macOS binary (x86_64) | Oscope_1.42.0.tgz |
Reverse dependencies
Imports Me (1): scDDboost