DiscoRhythm
This is the released version of DiscoRhythm; for the devel version, see DiscoRhythm.
All Bioconductor versions of DiscoRhythm
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9
Interactive Workflow for Discovering Rhythmicity in Biological Data
Bioconductor version: 3.23 · Package version: 1.28.0
Set of functions for estimation of cyclical characteristics, such as period, phase, amplitude, and statistical significance in large temporal datasets. Supporting functions are available for quality control, dimensionality reduction, spectral analysis, and analysis of experimental replicates. Contains a R Shiny web interface to execute all workflow steps.
Author: Matthew Carlucci [aut, cre], Algimantas Kriščiūnas [aut], Haohan Li [aut], Povilas Gibas [aut], Karolis Koncevičius [aut], Art Petronis [aut], Gabriel Oh [aut]
Maintainer: Matthew Carlucci <Matthew.Carlucci at camh.ca>
Citation
From within R, enter citation("DiscoRhythm"):
Matthew Carlucci, Algimantas Kriščiūnas, Haohan Li, Povilas Gibas, Karolis Koncevičius, Art Petronis, Gabriel Oh. DiscoRhythm: Interactive Workflow for Discovering Rhythmicity in Biological Data. doi:10.18129/B9.bioc.DiscoRhythm, R package version 1.28.0, https://bioconductor.org/packages/DiscoRhythm.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DiscoRhythm")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.28.0 |
| License | GPL-3 |
| URL | https://github.com/matthewcarlucci/DiscoRhythm |
| Bug Reports | https://github.com/matthewcarlucci/DiscoRhythm/issues |
| System Requirements | To generate html reports pandoc (http://pandoc.org/installing.html) is required. |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.9 (R-3.6) (7 years) |
| Downloads rank | 1113 of 2,418 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | GUI, PrincipalComponent, QualityControl, Software, TimeCourse, Visualization |
| Package Short Url | https://bioconductor.org/packages/DiscoRhythm/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DiscoRhythm")| Introduction to r BiocStyle::Biocpkg('DiscoRhythm') | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | DiscoRhythm_1.28.0.tar.gz |
| Windows binary (x86_64) | DiscoRhythm_1.28.0.zip |
| macOS binary (arm64) | DiscoRhythm_1.28.0.tgz |
| macOS binary (x86_64) | DiscoRhythm_1.28.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/DiscoRhythm |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DiscoRhythm |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 3.6.0)
Imports: matrixTests, matrixStats, MetaCycle (>= 1.2.0), data.table, ggplot2, ggExtra, dplyr, broom, shiny, shinyBS, shinycssloaders, shinydashboard, shinyjs, BiocStyle, rmarkdown, knitr, kableExtra, magick, VennDiagram, UpSetR, heatmaply, viridis, plotly, DT, gridExtra, methods, stats, SummarizedExperiment, BiocGenerics, S4Vectors, zip, reshape2
Suggests: testthat