DeconRNASeq
All Bioconductor versions of DeconRNASeq
3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11
Deconvolution of Heterogeneous Tissue Samples for mRNA-Seq data
Bioconductor version: 3.23 · Package version: 1.54.0
DeconSeq is an R package for deconvolution of heterogeneous tissues based on mRNA-Seq data. It modeled expression levels from heterogeneous cell populations in mRNA-Seq as the weighted average of expression from different constituting cell types and predicted cell type proportions of single expression profiles.
Author: Ting Gong <tinggong at gmail.com> Joseph D. Szustakowski <joseph.szustakowski at novartis.com>
Maintainer: Ting Gong <tinggong at gmail.com>
Citation
From within R, enter citation("DeconRNASeq"):
Ting Gong Joseph D. Szustakowski. DeconRNASeq: Deconvolution of Heterogeneous Tissue Samples for mRNA-Seq data. doi:10.18129/B9.bioc.DeconRNASeq, R package version 1.54.0, https://bioconductor.org/packages/DeconRNASeq.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DeconRNASeq")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.54.0 |
| License | GPL-2 |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 2.11 (R-2.15) (14 years) |
| Status | Deprecated |
| Downloads rank | 1055 of 2,418 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | DifferentialExpression, Software |
| Package Short Url | https://bioconductor.org/packages/DeconRNASeq/ |
Documentation
| Reference Manual |
Download
Follow the installation instructions to use this package in your R session.
| Windows binary (x86_64) | DeconRNASeq_1.53.1.zip |
| macOS binary (arm64) | DeconRNASeq_1.53.1.tgz |
| macOS binary (x86_64) | DeconRNASeq_1.53.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/DeconRNASeq |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DeconRNASeq |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 2.14.0), limSolve, pcaMethods, ggplot2, grid
Reverse dependencies
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