DExMA
Differential Expression Meta-Analysis
Bioconductor version: Release (3.19)
performing all the steps of gene expression meta-analysis considering the possible existence of missing genes. It provides the necessary functions to be able to perform the different methods of gene expression meta-analysis. In addition, it contains functions to apply quality controls, download GEO datasets and show graphical representations of the results.
Author: Juan Antonio Villatoro-García [aut, cre], Pedro Carmona-Sáez [aut]
Maintainer: Juan Antonio Villatoro-García <juanantoniovillatorogarcia at gmail.com>
citation("DExMA")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DExMA")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DExMA")
Differential Expression Meta-Analysis with DExMA package | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DifferentialExpression, GeneExpression, QualityControl, Software, StatisticalMethod |
Version | 1.12.0 |
In Bioconductor since | BioC 3.13 (R-4.1) (3.5 years) |
License | GPL-2 |
Depends | R (>= 4.1), DExMAdata |
Imports | Biobase, GEOquery, impute, limma, pheatmap, plyr, scales, snpStats, sva, swamp, stats, methods, utils, bnstruct, RColorBrewer, grDevices |
System Requirements | |
URL |
See More
Suggests | BiocStyle, qpdf, BiocGenerics, RUnit |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | DExMA_1.12.0.tar.gz |
Windows Binary | DExMA_1.12.0.zip |
macOS Binary (x86_64) | DExMA_1.12.0.tgz |
macOS Binary (arm64) | DExMA_1.12.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/DExMA |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DExMA |
Bioc Package Browser | https://code.bioconductor.org/browse/DExMA/ |
Package Short Url | https://bioconductor.org/packages/DExMA/ |
Package Downloads Report | Download Stats |