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CCPlotR

Plots For Visualising Cell-Cell Interactions


Bioconductor version: Release (3.18)

CCPlotR is an R package for visualising results from tools that predict cell-cell interactions from single-cell RNA-seq data. These plots are generic and can be used to visualise results from multiple tools such as Liana, CellPhoneDB, NATMI etc.

Author: Sarah Ennis [aut, cre] , Pilib Ó Broin [aut], Eva Szegezdi [aut]

Maintainer: Sarah Ennis <ennissarah94 at gmail.com>

Citation (from within R, enter citation("CCPlotR")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CCPlotR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CCPlotR")
User Guide HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews CellBiology, Network, SingleCell, Software, SystemsBiology, Visualization
Version 1.0.0
In Bioconductor since BioC 3.18 (R-4.3) (< 6 months)
License MIT + file LICENSE
Depends
Imports plyr, tidyr, dplyr, ggplot2, forcats, ggraph, igraph, scatterpie, circlize, ComplexHeatmap, tibble, grid, ggbump, stringr, ggtext, ggh4x, patchwork, RColorBrewer, scales, viridis, grDevices, graphics, stats, methods
System Requirements
URL https://github.com/Sarah145/CCPlotR
Bug Reports https://github.com/Sarah145/CCPlotR/issues
See More
Suggests knitr, rmarkdown, BiocStyle, testthat (>= 3.0.0)
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CCPlotR_1.0.0.tar.gz
Windows Binary CCPlotR_1.0.0.zip (64-bit only)
macOS Binary (x86_64) CCPlotR_1.0.0.tgz
macOS Binary (arm64) CCPlotR_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CCPlotR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CCPlotR
Bioc Package Browser https://code.bioconductor.org/browse/CCPlotR/
Package Short Url https://bioconductor.org/packages/CCPlotR/
Package Downloads Report Download Stats