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BubbleTree: an intuitive visualization to elucidate tumoral aneuploidy and clonality in somatic mosaicism using next generation sequencing data

Bioconductor version: Release (3.19)

CNV analysis in groups of tumor samples.

Author: Wei Zhu <zhuw at>, Michael Kuziora <kuzioram at>, Todd Creasy <creasyt at>, Brandon Higgs <higgsb at>

Maintainer: Todd Creasy <creasyt at>, Wei Zhu <weizhu365 at>

Citation (from within R, enter citation("BubbleTree")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

BubbleTree Tutorial HTML R Script
Reference Manual PDF


biocViews CopyNumberVariation, Coverage, Sequencing, Software
Version 2.34.0
In Bioconductor since BioC 3.1 (R-3.2) (9.5 years)
License LGPL (>= 3)
Depends R (>= 3.5), IRanges, GenomicRanges, plyr, dplyr, magrittr
Imports BiocGenerics(>= 0.31.6), BiocStyle, Biobase, ggplot2, WriteXLS, gtools, RColorBrewer, limma, grid, gtable, gridExtra, biovizBase, e1071, methods, grDevices, stats, utils
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Source Package BubbleTree_2.34.0.tar.gz
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