BubbleTree
BubbleTree: an intuitive visualization to elucidate tumoral aneuploidy and clonality in somatic mosaicism using next generation sequencing data
Bioconductor version: 3.23 · Package version: 2.42.0
CNV analysis in groups of tumor samples.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BubbleTree")Details
| Maintainer | Todd Creasy <creasyt@medimmune.com>, Wei Zhu <weizhu365@gmail.com> |
| Author | Wei Zhu <zhuw@medimmune.com>, Michael Kuziora <kuzioram@medimmune.com>, Todd Creasy <creasyt@medimmune.com>, Brandon Higgs <higgsb@medimmune.com> |
| License | LGPL (>= 3) |
| Status | Deprecated |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | CopyNumberVariation, Coverage, Sequencing, Software |
| Package Short Url | https://bioconductor.org/packages/BubbleTree/ |
Citation
From within R, enter citation("BubbleTree"):
Wei Zhu, Michael Kuziora, Todd Creasy, Brandon Higgs. BubbleTree: BubbleTree: an intuitive visualization to elucidate tumoral aneuploidy and clonality in somatic mosaicism using next generation sequencing data. doi:10.18129/B9.bioc.BubbleTree, R package version 2.42.0, https://bioconductor.org/packages/BubbleTree.
Generated from the package metadata; it may differ from the package's own citation.
Dependencies
Depends: R (>= 3.5), IRanges, GenomicRanges, plyr, dplyr, magrittr
Imports: BiocGenerics (>= 0.31.6), BiocStyle, Biobase, ggplot2, WriteXLS, gtools, RColorBrewer, limma, grid, gtable, gridExtra, biovizBase, e1071, methods, grDevices, stats, utils