BridgeDbR
This is the released version of BridgeDbR; for the devel version, see BridgeDbR.
All Bioconductor versions of BridgeDbR
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0
Code for using BridgeDb identifier mapping framework from within R
Bioconductor version: 3.23 · Package version: 2.22.0
Use BridgeDb functions and load identifier mapping databases in R. It uses GitHub, Zenodo, and Figshare if you use this package to download identifier mappings files.
Author: Christ Leemans <christleemans at gmail.com>, Egon Willighagen <egon.willighagen at gmail.com>, Denise Slenter, Anwesha Bohler <anweshabohler at gmail.com>, Lars Eijssen <l.eijssen at maastrichtuniversity.nl>, Tooba Abbassi-Daloii
Maintainer: Egon Willighagen <egon.willighagen at gmail.com>
Citation
From within R, enter citation("BridgeDbR"):
Christ Leemans, Egon Willighagen, Denise Slenter, Anwesha Bohler, Lars Eijssen, Tooba Abbassi-Daloii. BridgeDbR: Code for using BridgeDb identifier mapping framework from within R. doi:10.18129/B9.bioc.BridgeDbR, R package version 2.22.0, https://bioconductor.org/packages/BridgeDbR.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BridgeDbR")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 2.22.0 |
| License | AGPL-3 |
| URL | https://github.com/bridgedb/BridgeDbR |
| Bug Reports | https://github.com/bridgedb/BridgeDbR/issues |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.0 (R-3.1) (11 years) |
| Downloads rank | 944 of 2,418 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | Annotation, Cheminformatics, Metabolomics, Software |
| Package Short Url | https://bioconductor.org/packages/BridgeDbR/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BridgeDbR")| BridgeDbR Tutorial | HTML | R Script |
| Secondary identifiers | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | BridgeDbR_2.22.0.tar.gz |
| Windows binary (x86_64) | BridgeDbR_2.22.0.zip |
| macOS binary (arm64) | BridgeDbR_2.22.0.tgz |
| macOS binary (x86_64) | BridgeDbR_2.22.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/BridgeDbR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BridgeDbR |
| Package Downloads Report | Download Stats |