netboost

This is the released version of netboost; for the devel version, see netboost.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9

Network Analysis Supported by Boosting

Bioconductor version: Release (3.23)

Boosting supported network analysis for high-dimensional omics applications. This package comes bundled with the MC-UPGMA clustering package by Yaniv Loewenstein.

Author: Pascal Schlosser [aut, cre] ORCID: 0000-0002-8460-0462 , Jochen Knaus [aut, ctb], Yaniv Loewenstein [aut]

Maintainer: Pascal Schlosser <pascal.schlosser at uniklinik-freiburg.de>

Citation (from within R, enter citation("netboost")):

Pascal Schlosser, Jochen Knaus, Yaniv Loewenstein. netboost: Network Analysis Supported by Boosting. doi:10.18129/B9.bioc.netboost, R package version 2.20.0, https://bioconductor.org/packages/netboost.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("netboost")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("netboost")

The Netboost users guide	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	BiomedicalInformatics, Clustering, DimensionReduction, Epigenetics, GraphAndNetwork, Metabolomics, Network, Software, StatisticalMethod, Transcriptomics
Version	2.20.0
In Bioconductor since	BioC 3.9 (R-3.6) (7.5 years)
License	GPL-3
Depends	R (>= 4.0.0)
Imports	Rcpp, RcppParallel, parallel, grDevices, graphics, stats, utils, dynamicTreeCut, WGCNA, impute, colorspace, methods, R.utils
System Requirements	GNU make, Bash, Perl, Gzip
URL	https://bioconductor.org/packages/release/bioc/html/netboost.html
Bug Reports	mailto:pascal.schlosser@uniklinik-freiburg.de

Suggests	knitr, rmarkdown, BiocStyle
Linking To	Rcpp, RcppParallel
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	netboost_2.20.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)	netboost_2.20.0.tgz
macOS Binary (sonoma-arm64)	netboost_2.20.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/netboost
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/netboost
Package Short Url	https://bioconductor.org/packages/netboost/
Package Downloads Report	Download Stats