iSEEhub
This is the released version of iSEEhub; for the devel version, see iSEEhub.
All Bioconductor versions of iSEEhub
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16
iSEE for the Bioconductor ExperimentHub
Bioconductor version: 3.23 · Package version: 1.14.0
This package defines a custom landing page for an iSEE app interfacing with the Bioconductor ExperimentHub. The landing page allows users to browse the ExperimentHub, select a data set, download and cache it, and import it directly into a Bioconductor iSEE app.
Author: Kevin Rue-Albrecht [aut, cre] 
Maintainer: Kevin Rue-Albrecht <kevinrue67 at gmail.com>
Citation
From within R, enter citation("iSEEhub"):
Kevin Rue-Albrecht. iSEEhub: iSEE for the Bioconductor ExperimentHub. doi:10.18129/B9.bioc.iSEEhub, R package version 1.14.0, https://bioconductor.org/packages/iSEEhub.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("iSEEhub")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.14.0 |
| License | Artistic-2.0 |
| URL | https://github.com/iSEE/iSEEhub |
| Bug Reports | https://support.bioconductor.org/t/iSEEhub |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.16 (R-4.2) (3 years) |
| Downloads rank | 1399 of 2,418 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataImport, ImmunoOncology Infrastructure, ShinyApps, SingleCell, Software |
| Package Short Url | https://bioconductor.org/packages/iSEEhub/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("iSEEhub")| Contributing to iSEEhub | HTML | R Script |
| Introduction to iSEEhub | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | iSEEhub_1.14.0.tar.gz |
| Windows binary (x86_64) | iSEEhub_1.14.0.zip |
| macOS binary (arm64) | iSEEhub_1.14.0.tgz |
| macOS binary (x86_64) | iSEEhub_1.14.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/iSEEhub |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/iSEEhub |
| Package Downloads Report | Download Stats |
Dependencies
Depends: SummarizedExperiment, SingleCellExperiment, ExperimentHub
Imports: AnnotationHub, BiocManager, DT, iSEE, methods, rintrojs, S4Vectors, shiny, shinydashboard, shinyjs, utils
Suggests: BiocStyle, covr, knitr, RefManageR, rmarkdown, sessioninfo, testthat (>= 3.0.0), nullrangesData
Enhances: BioPlex, biscuiteerData, bodymapRat, CLLmethylation, CopyNeutralIMA, curatedAdipoArray, curatedAdipoChIP, curatedMetagenomicData, curatedTCGAData, DMRcatedata, DuoClustering2018, easierData, emtdata, epimutacionsData, FieldEffectCrc, GenomicDistributionsData, GSE103322, GSE13015, GSE62944, HDCytoData, HMP16SData, HumanAffyData, imcdatasets, mcsurvdata, MetaGxBreast, MetaGxOvarian, MetaGxPancreas, MethylSeqData, muscData, NxtIRFdata, ObMiTi, quantiseqr, restfulSEData, RLHub, sesameData, SimBenchData, SingleCellMultiModal, SingleMoleculeFootprintingData, spatialDmelxsim, STexampleData, TabulaMurisData, TabulaMurisSenisData, TENxVisiumData, tissueTreg, VectraPolarisData, xcoredata