humanHippocampus2024
Access to SRT and snRNA-seq data from spatial_HPC project
Bioconductor version: 3.23 · Package version: 1.4.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
This is an ExperimentHub Data package that helps to access the spatially-resolved transcriptomics and single-nucleus RNA sequencing data. The datasets are generated from adjacent tissue sections of the anterior human hippocampus across ten adult neurotypical donors. The datasets are based on [spatial_hpc](https://github.com/LieberInstitute/spatial_hpc) project by Lieber Institute for Brain Development (LIBD) researchers and collaborators.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("humanHippocampus2024")Details
| Maintainer | Christine Hou <chris2018hou@gmail.com> |
| Author | Christine Hou [aut, cre] (ORCID: <https://orcid.org/0009-0001-5350-0629>) |
| License | Artistic-2.0 |
| URL | https://github.com/LieberInstitute/spatial_hpc, https://christinehou11.github.io/humanHippocampus2024/ |
| Bug Reports | https://support.bioconductor.org/t/humanHippocampus2024 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SequencingData, SpatialData, Tissue |
| Package Short Url | https://bioconductor.org/packages/humanHippocampus2024/ |
Citation
From within R, enter citation("humanHippocampus2024"):
Christine Hou. humanHippocampus2024: Access to SRT and snRNA-seq data from spatial_HPC project. doi:10.18129/B9.bioc.humanHippocampus2024, R package version 1.4.0, https://bioconductor.org/packages/humanHippocampus2024.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | humanHippocampus2024_1.4.0.tar.gz |
Dependencies
Depends: R (>= 4.4)
Imports: ExperimentHub, SummarizedExperiment, SpatialExperiment
Suggests: testthat (>= 3.0.0), sessioninfo, rmarkdown, knitr, BiocStyle, ExperimentHubData, AnnotationHubData, RefManageR