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healthyControlsPresenceChecker

This is the released version of healthyControlsPresenceChecker; for the devel version, see healthyControlsPresenceChecker.

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Dowloads A Gene Expression Dataset From GEO And Checks If It Contains Data Of Healthy Controls Or Not

DOI: 10.18129/B9.bioc.healthyControlsPresenceChecker

Bioconductor version: Release (3.23)

A function that reads in the GEO accession code of a gene expression dataset, retrieves its data from GEO, and checks if data of healthy controls are present in the dataset. It returns true if healthy controls data are found, and false otherwise. GEO: Gene Expression Omnibus. ID: identifier code. The GEO datasets are downloaded from the URL <https://ftp.ncbi.nlm.nih.gov/geo/series/>.

Author: Davide Chicco [aut, cre] ORCID: 0000-0001-9655-7142

Maintainer: Davide Chicco <davide.chicco at gmail.com>

Citation (from within R, enter citation("healthyControlsPresenceChecker")):

Davide Chicco. healthyControlsPresenceChecker: Dowloads A Gene Expression Dataset From GEO And Checks If It Contains Data Of Healthy Controls Or Not. doi:10.18129/B9.bioc.healthyControlsPresenceChecker, R package version 1.16.0, https://bioconductor.org/packages/healthyControlsPresenceChecker.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("healthyControlsPresenceChecker")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("healthyControlsPresenceChecker")

Details

Package Archives

Follow Installation instructions to use this package in your R session.