gwasurvivr

This is the released version of gwasurvivr; for the devel version, see gwasurvivr.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8

gwasurvivr: an R package for genome wide survival analysis

Bioconductor version: Release (3.23)

gwasurvivr is a package to perform survival analysis using Cox proportional hazard models on imputed genetic data.

Author: Abbas Rizvi, Ezgi Karaesmen, Martin Morgan, Lara Sucheston-Campbell

Maintainer: Abbas Rizvi <aarizv at gmail.com>

Citation (from within R, enter citation("gwasurvivr")):

Abbas Rizvi, Ezgi Karaesmen, Martin Morgan, Lara Sucheston-Campbell. gwasurvivr: gwasurvivr: an R package for genome wide survival analysis. doi:10.18129/B9.bioc.gwasurvivr, R package version 1.30.0, https://bioconductor.org/packages/gwasurvivr.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("gwasurvivr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gwasurvivr")

gwasurvivr Vignette	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	BiomedicalInformatics, GeneticVariability, Genetics, GenomeWideAssociation, Pharmacogenomics, Regression, SNP, Software, Survival
Version	1.30.0
In Bioconductor since	BioC 3.8 (R-3.5) (8 years)
License	Artistic-2.0
Depends	R (>= 3.4.0)
Imports	GWASTools, survival, VariantAnnotation, parallel, matrixStats, SummarizedExperiment, stats, utils, SNPRelate
System Requirements
URL	https://github.com/suchestoncampbelllab/gwasurvivr

Suggests	BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	gwasurvivr_1.30.0.tar.gz
Windows Binary (x86_64)	gwasurvivr_1.30.0.zip
macOS Binary (big-sur-x86_64)	gwasurvivr_1.30.0.tgz
macOS Binary (sonoma-arm64)	gwasurvivr_1.30.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/gwasurvivr
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/gwasurvivr
Package Short Url	https://bioconductor.org/packages/gwasurvivr/
Package Downloads Report	Download Stats