goTools

This is the released version of goTools; for the devel version, see goTools.

Functions for Gene Ontology database

Bioconductor version: Release (3.23)

Wraper functions for description/comparison of oligo ID list using Gene Ontology database

Author: Yee Hwa (Jean) Yang <jean at biostat.ucsf.edu>, Agnes Paquet <paquetagnes at yahoo.com>

Maintainer: Agnes Paquet <paquetagnes at yahoo.com>

Citation (from within R, enter citation("goTools")):

Seminal Bioconductor project articles:

Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.

Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("goTools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("goTools")

goTools overview	PDF	R Script
Reference Manual	PDF
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	GO, Microarray, Software, Visualization
Version	1.86.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 21 years)
License	GPL-2
Depends	GO.db
Imports	AnnotationDbi, GO.db, graphics, grDevices
System Requirements
URL

Suggests	hgu133a.db
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	goTools_1.86.0.tar.gz
Windows Binary (x86_64)	goTools_1.86.0.zip
macOS Binary (big-sur-x86_64)	goTools_1.86.0.tgz
macOS Binary (sonoma-arm64)	goTools_1.86.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/goTools
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/goTools
Bioc Package Browser	https://code.bioconductor.org/browse/goTools/
Package Short Url	https://bioconductor.org/packages/goTools/
Package Downloads Report	Download Stats