gesel
This is the development version of gesel; to use it, please install the devel version of Bioconductor.
Search for Interesting Gene Sets
Bioconductor version: Development (3.24)
Query the gesel indices to identify interesting gene sets. Users can test for enrichment in their own list of genes and/or search by text in the set names or descriptions. The indices can be hosted remotely or on a local filesystem.
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>
citation("gesel")):Aaron Lun. gesel: Search for Interesting Gene Sets. doi:10.18129/B9.bioc.gesel, R package version 0.99.5, https://bioconductor.org/packages/gesel.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("gesel")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("gesel")| Working with the Gesel database | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DataImport, GeneSetEnrichment, Pathways, Software |
| Version | 0.99.5 |
| In Bioconductor since | BioC 3.24 (R-4.6) |
| License | MIT + file LICENSE |
| Depends | |
| Imports | utils, methods, rappdirs, httr2, Rcpp |
| System Requirements | |
| URL | https://github.com/gesel-inc/gesel-R |
| Bug Reports | https://github.com/gesel-inc/gesel-R/issues |
See More
| Suggests | BiocStyle, knitr, testthat, rmarkdown, S4Vectors, IRanges |
| Linking To | assorthead, Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | gesel_0.99.5.tar.gz |
| Windows Binary (x86_64) | gesel_0.99.5.zip |
| macOS Binary (big-sur-x86_64) | gesel_0.99.5.tgz |
| macOS Binary (sonoma-arm64) | gesel_0.99.5.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/gesel |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/gesel |
| Package Short Url | https://bioconductor.org/packages/gesel/ |
| Package Downloads Report | Download Stats |