genArise
This is the released version of genArise; for the devel version, see genArise.
Microarray Analysis tool
Bioconductor version: Release (3.23)
genArise is an easy to use tool for dual color microarray data. Its GUI-Tk based environment let any non-experienced user performs a basic, but not simple, data analysis just following a wizard. In addition it provides some tools for the developer.
Author: Ana Patricia Gomez Mayen <pgomez at ifc.unam.mx>,\\ Gustavo Corral Guille <gcorral at ifc.unam.mx>, \\ Lina Riego Ruiz <lriego at ifc.unam.mx>,\\ Gerardo Coello Coutino <gcoello at ifc.unam.mx>
Maintainer: IFC Development Team <info-genarise at ifc.unam.mx>
citation("genArise")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("genArise")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("genArise")| genAriseGUI Vignette | R Script | |
| Reference Manual | ||
| LICENSE | Text |
Details
| biocViews | Microarray, Preprocessing, Software, TwoChannel |
| Version | 1.88.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 21 years) |
| License | file LICENSE |
| Depends | R (>= 1.7.1), locfit, tkrplot, methods |
| Imports | graphics, grDevices, methods, stats, tcltk, utils, xtable |
| System Requirements | |
| URL | http://www.ifc.unam.mx/genarise |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | genArise_1.88.0.tar.gz |
| Windows Binary (x86_64) | genArise_1.88.0.zip |
| macOS Binary (big-sur-x86_64) | genArise_1.88.0.tgz |
| macOS Binary (sonoma-arm64) | genArise_1.88.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/genArise |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/genArise |
| Bioc Package Browser | https://code.bioconductor.org/browse/genArise/ |
| Package Short Url | https://bioconductor.org/packages/genArise/ |
| Package Downloads Report | Download Stats |