fastRanges
This is the development version of fastRanges; to use it, please install the devel version of Bioconductor.
Deterministic Multithreaded Genomic Interval Operations
Bioconductor version: Development (3.23)
High-performance interval overlap and join operations for 'IRanges' and 'GenomicRanges'. The package provides deterministic multithreaded overlap computation, reusable subject indexes for repeated queries, and join helpers that keep range metadata in a consistent output grammar.
Author: Chirag Parsania [aut, cre] (github: cparsania)
Maintainer: Chirag Parsania <chirag.parsania at gmail.com>
citation("fastRanges")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("fastRanges")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("fastRanges")| fastRanges: A Practical Introduction to Genomic Interval Analysis | HTML | R Script |
| Reference Manual |
Details
| biocViews | Infrastructure, Sequencing, Software |
| Version | 0.99.2 |
| In Bioconductor since | BioC 3.23 (R-4.6) |
| License | Artistic-2.0 |
| Depends | R (>= 4.5.0) |
| Imports | methods, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, Rcpp |
| System Requirements | quarto |
| URL | https://github.com/cparsania/fastRanges https://cparsania.github.io/fastRanges/ |
| Bug Reports | https://github.com/cparsania/fastRanges/issues |
See More
| Suggests | BiocStyle, testthat (>= 3.0.0), knitr, rmarkdown, pkgdown, XVector, ggplot2, dplyr, tidyr, scales |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | fastRanges_0.99.2.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (big-sur-arm64) | |
| macOS Binary (sonoma-arm64) | fastRanges_0.99.2.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/fastRanges |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/fastRanges |
| Bioc Package Browser | https://code.bioconductor.org/browse/fastRanges/ |
| Package Short Url | https://bioconductor.org/packages/fastRanges/ |
| Package Downloads Report | Download Stats |