exploreSE
This is the development version of exploreSE; to use it, please install the devel version of Bioconductor.
Explorer for Your Bulk RNA Seq Analyses
Bioconductor version: Development (3.24)
Interactive exploration of a Summarized experiment and associated DE analyses. A shiny app to inspect and interact with pre-calculated differential expression and functional enrichment results, and to facilitate comparisons between multiple models. This is meant to be a tool for exploration and discussion, rather than analysis.
Author: Jasper Spitzer [aut, cre] 
Maintainer: Jasper Spitzer <jasspitzer135 at gmail.com>
citation("exploreSE")):Jasper Spitzer. exploreSE: Explorer for Your Bulk RNA Seq Analyses. doi:10.18129/B9.bioc.exploreSE, R package version 0.99.12, https://bioconductor.org/packages/exploreSE.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("exploreSE")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("exploreSE")| Introduction to exploreSE | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | GO, GeneExpression, Pathways, RNASeq, ShinyApps, Software, Visualization |
| Version | 0.99.12 |
| In Bioconductor since | BioC 3.24 (R-4.6) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.5.0) |
| Imports | BiocGenerics, clusterProfiler, colourpicker, DeeDeeExperiment, DESeq2, dplyr, DT, forcats, ggplot2, htmltools, magrittr, matrixStats, methods, msigdbr, org.Hs.eg.db, org.Mm.eg.db, plotly, purrr, readr, rlang, S4Vectors, shiny, shinyWidgets, stats, stringr, SummarizedExperiment, tibble, tidyr, tidyselect |
| System Requirements | |
| URL | https://github.com/jaspitzer/exploreSE |
| Bug Reports | https://github.com/jaspitzer/exploreSE/issues |
See More
| Suggests | airway, BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | exploreSE_0.99.12.tar.gz |
| Windows Binary (x86_64) | exploreSE_0.99.12.zip |
| macOS Binary (big-sur-x86_64) | exploreSE_0.99.12.tgz |
| macOS Binary (sonoma-arm64) | exploreSE_0.99.12.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/exploreSE |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/exploreSE |
| Package Short Url | https://bioconductor.org/packages/exploreSE/ |
| Package Downloads Report | Download Stats |