epivizrChart

This is the released version of epivizrChart; for the devel version, see epivizrChart.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6

R interface to epiviz web components

Bioconductor version: Release (3.23)

This package provides an API for interactive visualization of genomic data using epiviz web components. Objects in R/BioConductor can be used to generate interactive R markdown/notebook documents or can be visualized in the R Studio's default viewer.

Author: Brian Gottfried [aut], Jayaram Kancherla [aut], Hector Corrada Bravo [aut, cre]

Maintainer: Hector Corrada Bravo <hcorrada at gmail.com>

Citation (from within R, enter citation("epivizrChart")):

Brian Gottfried, Jayaram Kancherla, Hector Corrada Bravo. epivizrChart: R interface to epiviz web components. doi:10.18129/B9.bioc.epivizrChart, R package version 1.34.0, https://bioconductor.org/packages/epivizrChart.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("epivizrChart")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("epivizrChart")

Visualizing Files with epivizrChart	HTML	R Script
Visualizing genomic data in Shiny Apps using epivizrChart	HTML	R Script
Introduction to epivizrChart	HTML	R Script
Visualizing `RangeSummarizedExperiment` objects Shiny Apps using epivizrChart	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	GUI, Software, Visualization
Version	1.34.0
In Bioconductor since	BioC 3.6 (R-3.4) (9 years)
License	Artistic-2.0
Depends	R (>= 3.5.0)
Imports	epivizrData (>= 1.5.1), epivizrServer, htmltools, rjson, methods, BiocGenerics
System Requirements
URL

Suggests	testthat, roxygen2, knitr, Biobase, GenomicRanges, S4Vectors, IRanges, SummarizedExperiment, antiProfilesData, hgu133plus2.db, Mus.musculus, BiocStyle, Homo.sapiens, shiny, minfi, Rsamtools, rtracklayer, RColorBrewer, magrittr, AnnotationHub
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	epivizrChart_1.34.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)	epivizrChart_1.34.0.tgz
macOS Binary (sonoma-arm64)	epivizrChart_1.34.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/epivizrChart
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/epivizrChart
Package Short Url	https://bioconductor.org/packages/epivizrChart/
Package Downloads Report	Download Stats