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This is the development version of rnaseqDTU; for the stable release version, see rnaseqDTU.

RNA-seq workflow for differential transcript usage following Salmon quantification

Bioconductor version: Development (3.20)

RNA-seq workflow for differential transcript usage (DTU) following Salmon quantification. This workflow uses Bioconductor packages tximport, DRIMSeq, and DEXSeq to perform a DTU analysis on simulated data. It also shows how to use stageR to perform two-stage testing of DTU, a statistical framework to screen at the gene level and then confirm which transcripts within the significant genes show evidence of DTU.

Author: Michael Love [aut, cre], Charlotte Soneson [aut], Rob Patro [aut]

Maintainer: Michael Love <michaelisaiahlove at>

Citation (from within R, enter citation("rnaseqDTU")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

RNA-seq workflow for differential transcript usage following Salmon quantification HTML R Script


biocViews GeneExpressionWorkflow, ImmunoOncologyWorkflow, Workflow
Version 1.25.0
License Artistic-2.0
Depends R (>= 3.5.0), DRIMSeq, DEXSeq, stageR, DESeq2, edgeR, rafalib, devtools
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Suggests knitr, rmarkdown
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Source Package rnaseqDTU_1.25.0.tar.gz
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