drugTargetInteractions
This is the development version of drugTargetInteractions; for the stable release version, see drugTargetInteractions.
drugTargetInteractions: Mining the Druggable Genome
Bioconductor version: Development (3.24)
Utilities for identifying known drug-target interactions for a sets of query drug and/or target protein (gene) identifiers. The interaction information is obained from a series of drug/target databases.
Author: Thomas Girke [cre, aut] 
, Kevin Horan [ctb]
Maintainer: Thomas Girke <thomas.girke at ucr.edu>
citation("drugTargetInteractions")):Thomas Girke. drugTargetInteractions: drugTargetInteractions: Mining the Druggable Genome. doi:10.18129/B9.bioc.drugTargetInteractions, R package version 1.21.14, https://bioconductor.org/packages/drugTargetInteractions.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("drugTargetInteractions")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("drugTargetInteractions")| Drug-Target Interactions | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | BiomedicalInformatics, Cheminformatics, Metabolomics, Pharmacogenetics, Pharmacogenomics, Proteomics, Software |
| Version | 1.21.14 |
| In Bioconductor since | BioC 3.13 (R-4.1) (5.5 years) |
| License | Artistic-2.0 |
| Depends | methods, R (>= 4.1) |
| Imports | utils, stats, RSQLite, UniProt.ws, biomaRt, ensembldb, BiocFileCache, rappdirs, AnnotationFilter, S4Vectors, httr2, readxl, jsonlite |
| System Requirements | |
| URL | https://github.com/girke-lab/drugTargetInteractions |
| Bug Reports | https://github.com/girke-lab/drugTargetInteractions |
See More
| Suggests | RUnit, BiocStyle, knitr, rmarkdown, ggplot2, reshape2, DT, EnsDb.Hsapiens.v86, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | drugTargetInteractions_1.21.14.tar.gz |
| Windows Binary (x86_64) | drugTargetInteractions_1.21.14.zip |
| macOS Binary (big-sur-x86_64) | drugTargetInteractions_1.21.14.tgz |
| macOS Binary (sonoma-arm64) | drugTargetInteractions_1.21.14.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/drugTargetInteractions |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/drugTargetInteractions |
| Package Short Url | https://bioconductor.org/packages/drugTargetInteractions/ |
| Package Downloads Report | Download Stats |