ptairData
This is the development version of ptairData; for the stable release version, see ptairData.
PTR-TOF-MS volatolomics raw datasets from exhaled air and cell culture headspace
Bioconductor version: Development (3.24)
The package ptairData contains two raw datasets from Proton-Transfer-Reaction Time-of-Flight mass spectrometer acquisitions (PTR-TOF-MS), in the HDF5 format. One from the exhaled air of two volunteer healthy individuals with three replicates, and one from the cell culture headspace from two mycobacteria species and one control (culture medium only) with two replicates. Those datasets are used in the examples and in the vignette of the ptairMS package (PTR-TOF-MS data pre-processing). There are also used to gererate the ptrSet in the ptairMS data : exhaledPtrset and mycobacteriaSet
Author: camille Roquencourt [aut, cre]
Maintainer: camille Roquencourt <camille.roquencourt at hotmail.fr>
citation("ptairData")):camille Roquencourt. ptairData: PTR-TOF-MS volatolomics raw datasets from exhaled air and cell culture headspace. doi:10.18129/B9.bioc.ptairData, R package version 1.21.0, https://bioconductor.org/packages/ptairData.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("ptairData")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ptairData")| PTR-TOF-MS dataset | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CellCulture, ExperimentData, MassSpectrometryData |
| Version | 1.21.0 |
| In Bioconductor since | BioC 3.13 (R-4.1) (5.5 years) |
| License | GPL-3 |
| Depends | |
| Imports | rhdf5, signal, stats, graphics |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/camilleroquencourt/ptairData/issues |
See More
| Suggests | knitr, rmarkdown, testthat, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | ptairMS |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ptairData_1.21.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/ptairData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ptairData |
| Package Short Url | https://bioconductor.org/packages/ptairData/ |
| Package Downloads Report | Download Stats |