msdata
Various Mass Spectrometry raw data example files
Bioconductor version: 3.24 · Package version: 0.53.1
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Ion Trap positive ionization mode data in mzML file format. Subset from 500-850 m/z and 1190-1310 seconds, incl. MS2 and MS3, intensity threshold 100.000. Extracts from FTICR Apex III, m/z 400-450. Subset of UPLC - Bruker micrOTOFq data, both mzML and mz5. LC-MSMS and MRM files from proteomics experiments. PSI mzIdentML example files for various search engines.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("msdata")Details
| Maintainer | Steffen Neumann <sneumann@ipb-halle.de>, Laurent Gatto <laurent.gatto@uclouvain.be> |
| Author | Steffen Neumann <sneumann@ipb-halle.de>, Laurent Gatto <laurent.gatto@uclouvain.be> with contriutions from Johannes Rainer |
| License | GPL (>= 2) |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | ExperimentData, MassSpectrometryData |
| Package Short Url | https://bioconductor.org/packages/msdata/ |
Citation
From within R, enter citation("msdata"):
Steffen Neumann, Laurent Gatto with contriutions from Johannes Rainer. msdata: Various Mass Spectrometry raw data example files. doi:10.18129/B9.bioc.msdata, R package version 0.53.1, https://bioconductor.org/packages/msdata.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | msdata_0.53.1.tar.gz |
Reverse dependencies
Suggests Me (5): IPO, MSnbase, peakPantheR, RforProteomics, TargetDecoy