minionSummaryData

This is the development version of minionSummaryData; for the stable release version, see minionSummaryData.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2

Summarised MinION sequencing data published by Ashton et al. 2015

Bioconductor version: Development (3.24)

Summarised MinION sequencing data for Salmonella Typhi published by Ashton et al. in 2015. Three replicate runs are each provided as Fast5Summary objects.

Author: Mike Smith [aut, cre]

Maintainer: Mike Smith <grimbough at gmail.com>

Citation (from within R, enter citation("minionSummaryData")):

Mike Smith. minionSummaryData: Summarised MinION sequencing data published by Ashton et al. 2015. doi:10.18129/B9.bioc.minionSummaryData, R package version 1.43.0, https://bioconductor.org/packages/minionSummaryData.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("minionSummaryData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("minionSummaryData")

Creating example MinION summary dataset	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, SequencingData
Version	1.43.0
In Bioconductor since	BioC 3.2 (R-3.2) (11 years)
License	MIT + file LICENSE
Depends	R (>= 3.2.0)
Imports
System Requirements
URL

Suggests	BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	minionSummaryData_1.43.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/minionSummaryData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/minionSummaryData
Package Short Url	https://bioconductor.org/packages/minionSummaryData/
Package Downloads Report	Download Stats